The large Young’s modulus difference between chemically modified fullerene (PCBM) and a conjugated polymer was used to nanomechanically map the diffusion of PCBM into PTB7, a high-efficiency low-band-gap conjugated polymer. The sharp tip in nanomechanical atomic force microscopy ensures a high-resolution nanomechanical characterization of the diffusion front, with the intrinsic benefits of revealing the mechanical properties of the mixtures. Localized structure changes induced by diffusion were investigated by grazing incidence X-ray diffraction methods. We found a most unusual diffusion behavior that shows Case II characteristics, where a front of PTB7 saturated with PCBM moves into the pure PTB7 with a linear time dependence. This diffusion is due mainly to a majority fraction of the disordered PTB7 that has continuous paths for PCBM diffusion without obvious energetic barriers, and as diffusion proceeds, the paths for diffusion gets larger, leading to a step in the concentration profile. The donor/acceptor-dependent diffusion constants may also contribute to the observed Case-II-like diffusion front.